Dear BioPreDyn Partners,
I am writing to you in my function as the chair of the Innovation Board (IB) of our BioPreDyn consortium. As agreed during the kick-off meeting, one of the first tasks of the IB is collect information on what kind of code licenses are being used by all the BioPreDyn partners. It would be great if you could send us a brief description, ideally with web links to more detailed information, on the licensing schemes you are using or planning to use for software developed within the consortium. Please also provide us with information on why you use this particular licensing scheme, if possible.
I would be grateful, if you could send me this information at your earliest convenience, but no later than mid January. We will compile a document with the different licensing strategies, which will then serve as a basis for the discussions of the IB.
Thanks a lot for your collaboration!
Best,
Yogi
--
Dr. Johannes Jaeger
EMBL/CRG Research Unit in Systems Biology
CRG - Centre de Regulació Genòmica
Dr. Aiguader 88
08003 Barcelona, Spain
Phone: +34 93 316 02 85
Fax: +34 93 396 99 83
Email: yogi.jaeger(a)crg.es or yoginho(a)gmail.com
URL: http://www.crg.es/johannes_jaeger
Dear all,
Please fill in the doodle to find a date to celebrate a BioPreDyn Workshop at the CRG in June 2012.
http://www.doodle.com/zwf89q2rvgsa8fs6
Thanks in advance for your collaboration and happy 2012
Eva
Eva Navarrete
Systems Biology
CRG -Centre de Regulació Genòmica
Dr. Aiguader 88
08003 Barcelona
Ph: +34933160375
Fax: +34933969983
eva.navarrete(a)crg.eu<mailto:eva.navarrete@crg.eu>
www.crg.es/systems_biology<http://www.crg.es/systems_biology>
www.crg.es<http://www.crg.es/>
10 FELLOWSHIPS AVAILABLE TO CARRY OUT PhD STUDIES AT THE CENTER FOR GENOMIC REGULATION, FUNDED BY "LA CAIXA". MORE INFORMATION AT: www.crg.eu/lacaixa_fellowships<http://www.crg.eu/lacaixa_fellowships>
Aquest correu electrònic conté informació confidencial emparada pel secret professional. Qualsevol reproducció, distribució o divulgació del seu contingut estan estrictament prohibides. Si vostè no és el destinatari, li preguem no faci difusió ni copiï el seu contingut i ens ho notifiqui al més aviat possible per telèfon (+34 93 3160100) o a la adreça email suport(a)crg.es<mailto:suport@crg.es> <mailto:suport@crg.es>
Este correo electrónico contiene información confidencial amparada por el secreto profesional. Cualquier reproducción, distribución o divulgación de su contenido están estrictamente prohibidas. Si usted no es el destinatario, le rogamos no difunda ni copie su contenido y nos lo notifique de inmediato por teléfono (+34 93 3160100) o a la dirección suport(a)crg.es<mailto:suport@crg.es> <mailto:suport@crg.es>.
This electronic transmission contains confidential information guaranteed by professional privacy. Any reproduction, distribution or spreading of the content is strictly forbidden. If you are not the intended addressee, you are kindly requested not to disclose nor to copy this transmission and to notify us as soon as possible by phone (+34 93 3160100) or by email to the suport(a)crg.es<mailto:suport@crg.es> <mailto:suport@crg.es> address.
Dear BioPreDyn Partners,
As agreed during the BioPreDyn meeting, one of our first actions should be to define benchmark models for our algorithms. For this purpose, we have defined the following focus groups:
- E. coli: metabolic & regulatory network (Pedro)
- Yeast: metabolic & regulatory network (Pedro, Fluxome)
- Chinese Hamster Ovary (CHO) Cells: metabolic, regulatory & signaling network model (Diego, Insilico, Julio S, Pedro)
- Developmental Gene Regulatory Networks in animal systems (Yogi, Jaap)
We need to establish for each of these benchmark problems what kind of data are available for modeling. This should be done as soon as possible.
I would suggest that each focus group compiles the available data sets and writes a brief report on the nature and quality (completeness, technical accuracy etc.) of the data. I think we should aim at collecting such reports for each problem in February.
To facilitate information exchange, we have set up folders on our Alfresco sharing platform (see Olaf's last email for information on how to access it) for each Focus Group. This allows you to store and share your contributions centrally. The idea is that each partner in a focus group contributes descriptions of those data sets they know about. The different WP leaders can then collect this information for the specific modeling tasks in each work package.
Let me know if you have any problems/questions. I will try to provide an example report for the animal development focus group as soon as possible, and will be bugging you some more about this in the near future.
Happy holidays!
Best,
Yogi
--
Dr. Johannes Jaeger
EMBL/CRG Research Unit in Systems Biology
CRG - Centre de Regulació Genòmica
Dr. Aiguader 88
08003 Barcelona, Spain
Phone: +34 93 316 02 85
Fax: +34 93 396 99 83
Email: yogi.jaeger(a)crg.es or yoginho(a)gmail.com
URL: http://www.crg.es/johannes_jaeger
