Great work Yogi. Neil
Dear BioPreDyn PIs,
Here is a draft program for our first workshop, to be held at the CRG
in Barcelona on June 11-15, 2012. Please check it carefully, and
complement/change the parts that concern your contribution. Please
note that we have scheduled a steering committee meeting for all PIs
on Wed afternoon. It would be great if all of you could be here for
that.
(PEDRO: please confirm if you could come the first, instead of the
second part of the week. You had indicated that you would prefer the
latter, but we had too many people who couldn't come the first half of
the week at all. Besides, your topic would be a perfect opener for the
course!)
Mon, Jun 11:
morning: arrival
13:00-14:00 lunch
14:00-15:30 lecture: modeling/simulation, optimisation algorithms (Pedro)
15:30-16:00 coffee break
16:00-18:00 practical: COPASI (Pedro)
Tue, Jun 12
09:30-11:00 lecture: SB modelling cycle (part I), uncertainty
quantification (Joke)
11:00-11:30 coffee break
11:30-13:00 practical/additional lecture (Joke)
13:00-14:30 lunch
14:30-16:00 lecture: introduction to Gaussian processes (Neil)
16:00-16:30 coffee break
16:30-18:00 practical/additional lecture (Neil)
Wed, Jun 13
09:30-11:00 lecture: SB modelling cycle (part II), identifiability
analysis (Eva)
11:00-11:30 coffee break
11:30-13:00 lecture: optimal experimental design (Julio B)
13:00-14:30 lunch
14:30-16:00 practical: identifiability analysis/optimal experimental
design (Julio B/Eva)
16:00-16:30 coffee break
16:30-??:?? project steering committee meeting (PIs)
Tue, Jun 14
09:30-11:00 lecture: logical models of signalling networks (Julio S/Martijn)
11:00-11:30 coffee break
11:30-13:00 practical: CellNOpt (Julio S/Martijn)
13:00-14:30 lunch
14:30-16:00 lecture: reverse-engineering developmental gene regulatory
networks (Jaap/Yogi)
16:00-16:30 coffee break
16:30-18:00 practical/additional lecture (Jaap/Yogi)
Fri, Jun 15
09:30-11:00 lecture: CoSMo systems biology tools (Eric/Bertrand)
11:00-11:30 coffee break
11:30-13:00 discussion/evaluation
13:00-14:30 lunch
afternoon: departure
--- end of draft schedule ---
It would be great if you could send me your feedback over the next few
days. We will then go ahead and advertise the workshop among BioPreDyn
participants.
For the practical sessions, we would ask participants to bring their
own laptops. Please let me know if you think this is a problem. In
that case, we could rent a few additional laptops for the time of the
course.
Best,
Yogi
--
Dr. Johannes Jaeger
EMBL/CRG Research Unit in Systems Biology
CRG - Centre de Regulació Genòmica
Dr. Aiguader 88
08003 Barcelona, Spain
Phone: +34 93 316 02 85
Fax: +34 93 396 99 83
Email: yogi.jaeger@crg.es or yoginho@gmail.com
URL: http://www.crg.es/johannes_jaeger
-----
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FURTHER INFORMATION: www.crg.es/interpod
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