Dear Yogi,
I am not sure if I have done so, apologies if this is a repeat.
I am available, and I can teach either of the following topics:
- basic concepts of modelling and simulation with ODEs and stochastic
algorithms
- optimisation algorithms and applications of optimisation for
biochemical network modelling
- modelling and simulation using COPASI
- optimisation and parameter estimation with COPASI
best wishes
Pedro
--
Pedro Mendes
Professor of Computational Systems Biology
School of Computer Science
Manchester Centre for Integrative Systems Biology
University of Manchester
Manchester Interdisciplinary Biocentre
131 Princess Street
Manchester, M1 7DN, U.K.
On 02/23/2012 09:34 PM, Johannes Jaeger wrote:
Dear BioPreDyn Partners:
For all of you who have not done so yet, please indicate your
availability and the topics you could teach during the workshop in Jun
(see original email below for dates and suggested topics).
Julio Banga and I will draft a program for the workshop that we will
circulate as soon as possible. This is slightly urgent since we'll
need to open the application process and refine the schedule and
teaching format in time.
Thanks! (Especially to those of you who have already sent me this information.)
Best,
Yogi
On Wed, Jan 25, 2012 at 10:54 AM, Yogi Jaeger<Yogi.Jaeger(a)crg.eu> wrote:
Dear BioPreDyn PIs,
Some more detailed information on the BioPreDyn workshop Jun 11-15. We would like to ask
you to come to Barcelona for 2-3 days during that week. We will try to have people be here
either the first or the second half of the week, so we could all have a meeting together
on Wed to discuss the results of the work in the focus groups to define benchmark
problems.
It would be great if you could send your availability on either
Mon-Wed, Jun 11-13 or
Wed-Fri, Jun 13-15
to Eva Navarrete (eva.navarrete(a)crg.eu).
The teaching format would be to have about 1-1.5 hours of theoretical lecture, followed
by 1-2 hours of practical sessions (laptops can be provided by the CRG). We can
accommodate a maximum of 16 participants. Lectures/practicals should be taught by PIs
and/or senior postdocs. Academic partners would be expected to contribute. For commercial
partners: it would be great if CoSMo could present their software framework in a bit more
detail (theoretical lecture only?). Klaus (InSilico): it would be great if you would like
to contribute to the session on high-performance, for example. But contributions by SMEs
would be voluntary.
Apart from letting us know about your availability, could you tell me what kind of topics
you would like to cover. Julio Banga and I will co-ordinate your inputs into a (hopefully)
coherent program for the workshop.
Thanks a lot for your help with this!
Best,
Yogi