25 Jan
2012
25 Jan
'12
10:54 a.m.
Dear BioPreDyn PIs,
Some more detailed information on the BioPreDyn workshop Jun 11-15. We would like to ask
you to come to Barcelona for 2-3 days during that week. We will try to have people be here
either the first or the second half of the week, so we could all have a meeting together
on Wed to discuss the results of the work in the focus groups to define benchmark
problems.
It would be great if you could send your availability on either
Mon-Wed, Jun 11-13 or
Wed-Fri, Jun 13-15
to Eva Navarrete (eva.navarrete(a)crg.eu).
The teaching format would be to have about 1-1.5 hours of theoretical lecture, followed by
1-2 hours of practical sessions (laptops can be provided by the CRG). We can accommodate a
maximum of 16 participants. Lectures/practicals should be taught by PIs and/or senior
postdocs. Academic partners would be expected to contribute. For commercial partners: it
would be great if CoSMo could present their software framework in a bit more detail
(theoretical lecture only?). Klaus (InSilico): it would be great if you would like to
contribute to the session on high-performance, for example. But contributions by SMEs
would be voluntary.
Apart from letting us know about your availability, could you tell me what kind of topics
you would like to cover. Julio Banga and I will co-ordinate your inputs into a (hopefully)
coherent program for the workshop.
Thanks a lot for your help with this!
Best,
Yogi
26 Jan
26 Jan
10:21 a.m.
New subject: [Biopredyn_pi] BioPreDyn: software integration (task 3.5) -- ACTIONS NEEDED --
Dear BioPreDyn PIs,
(cc Bertrand Moreau, CSM)
as you know, one of the key expected outcomes of BioPreDyn is:
"To deliver an integrated suite of tools and newly
developed/improved algorithms to support the entire
model building cycle."
This integrated suite will be done in the framework of WP3,
and, more in particular, software integration is the focus
of task 3.5 and deliverable D3.4.
Although this task is leaded by CWI, in close cooperation
with CSM, we are all (except FS) involved since we are all
expected to contribute with novel and existing algorithms.
During the writing of the proposal, and also during other
contacts afterwards, we basically agreed that CSM will receive
methods from the other partners and will re-implement them
in their integrated software framework.
*The purpose of this email is to open a discussion on the
detailed road map to achieve this.
*
Following the proposal and the DIP of WP3 (attached again),
these are the*key topics and actions needed (marked with >>)*:
- CWI will develop an SB-cycle protocol with inputs from
all participants. >>*Joke(CWI): could you please write a draft
of this and distribute it so everyone can give feedback asap?*
- Each partner should detail, in agreement with the
project proposal, their contributions (methods/tools),
including the expected date when this will be sent to
CSM and some technical details (purpose, language, I/O
formats, etc.) *>> Eric/Bertrand(CSM): could you give
us a template of the minimum info you need for this?
Also, could you give us an example of an existing
software package using your framework? (if there is one)
> ALL: please send the info on your planned
contributions
following CSM's template
*
Finally, a suggestion: in the proposal (see also the DIP of WP3),
we also mentioned that INSIL will integrate some of these
algorithms into their own software framework. This enhances
the dissemination of the methods, a key objective of the
project. Maybe a subset of the methods can also be
integrated in COPASI. Feedback from Pedro on this?
What do the rest of you think about it?
Best regards,
Julio
--
-------------------------------------------------------------
Prof. Julio R. Banga
BioProcess Engineering Group
Instituto de Investigaciones Marinas
(C.S.I.C.)
Spanish Council for Scientific Research
C/Eduardo Cabello 6
36208 Vigo (SPAIN)
E-mail: julio(a)iim.csic.es
Web http://www.iim.csic.es/~julio/
http://www.iim.csic.es/~gingproc/
Blog http://jrbanga.posterous.com/
Positions http://www.iim.csic.es/~julio/positions.html
ph: +34 986 214 473 (direct)
fax: +34 986 292 762
-------------------------------------------------------------
27 Jan
27 Jan
9:45 a.m.
New subject: [Biopredyn_pi] BioPreDyn: software integration (task 3.5) -- ACTIONS NEEDED --
Dear all,
Enclosed with this e-mail you will find a software basic information
template; please send it back to us filled with information about your
respective contributions to BioPreDyn. Please do not hesitate to contact us
should you need any further information about this document.
Julio: concerning the software framework example you requested: we do not
have such an example. What we intend to do is to create analysis pipelines
by putting the developed tools together (binding language to be defined -
maybe Java, or Python, depending on the technologies used by the
contributors).
Best regards,
On Thu, Jan 26, 2012 at 10:21 AM, Julio R. Banga <julio(a)iim.csic.es> wrote:
Dear BioPreDyn PIs,
(cc Bertrand Moreau, CSM)
as you know, one of the key expected outcomes of BioPreDyn is:
"To deliver an integrated suite of tools and newly
developed/improved algorithms to support the entire
model building cycle."
This integrated suite will be done in the framework of WP3,
and, more in particular, software integration is the focus
of task 3.5 and deliverable D3.4.
Although this task is leaded by CWI, in close cooperation
with CSM, we are all (except FS) involved since we are all
expected to contribute with novel and existing algorithms.
During the writing of the proposal, and also during other
contacts afterwards, we basically agreed that CSM will receive
methods from the other partners and will re-implement them
in their integrated software framework.
*The purpose of this email is to open a discussion on the
detailed road map to achieve this.
*
Following the proposal and the DIP of WP3 (attached again),
these are the* key topics and actions needed (marked with >>)*:
- CWI will develop an SB-cycle protocol with inputs from
all participants. >>*Joke(CWI): could you please write a draft
of this and distribute it so everyone can give feedback asap?*
- Each partner should detail, in agreement with the
project proposal, their contributions (methods/tools),
including the expected date when this will be sent to
CSM and some technical details (purpose, language, I/O
formats, etc.) *>> Eric/Bertrand(CSM): could you give
us a template of the minimum info you need for this?
Also, could you give us an example of an existing
software package using your framework? (if there is one)
--
Bertrand Moreau
R&D engineer
The CoSMo Company
+336 58 27 42 08
This message and any attachments are the property of The CoSMo Company; they are strictly
confidential and intended solely for the addressees. If you are not the intended recipient
of this message, please delete it and immediately notify the sender. Any use not in
accordance with the purpose of this message and any dissemination or disclosure, either
whole or partial, is prohibited except with formal approval.
Ce message et toutes les pieces jointes sont la propriete de The CoSMo Company ; ils sont
etablis a l'intention exclusive de ses destinataires et sont confidentiels. Si vous
recevez ce message par erreur, merci de le detruire et d'en avertir immediatement
l'expediteur. Toute utilisation non conforme a sa destination, toute diffusion ou
toute publication, totale ou partielle est interdite, sans autorisation expresse.
> ALL: please send the info on your planned
contributions
following CSM's template
*
Finally, a suggestion: in the proposal (see also the DIP of WP3),
we also mentioned that INSIL will integrate some of these
algorithms into their own software framework. This enhances
the dissemination of the methods, a key objective of the
project. Maybe a subset of the methods can also be
integrated in COPASI. Feedback from Pedro on this?
What do the rest of you think about it?
Best regards,
Julio
--
-------------------------------------------------------------
Prof. Julio R. Banga
BioProcess Engineering Group
Instituto de Investigaciones Marinas
(C.S.I.C.)
Spanish Council for Scientific Research
C/Eduardo Cabello 6
36208 Vigo (SPAIN)
E-mail: julio(a)iim.csic.es
Web http://www.iim.csic.es/~julio/
http://www.iim.csic.es/~gingproc/
Blog http://jrbanga.posterous.com/
Positions http://www.iim.csic.es/~julio/positions.html
ph: +34 986 214 473 (direct)
fax: +34 986 292 762
-------------------------------------------------------------
8 Feb
8 Feb
10:18 a.m.
New subject: [Biopredyn_pi] BioPreDyn: software integration (task 3.5) -- ACTIONS NEEDED --
Dear BioPreDyn PIs,
this is a friendly reminder regarding some of the actions needed listed
below. We really need to define a roadmap for the software integration,
so, if you have not done so, please send your feedback and requested
materials (below) asap.
Bertrand, could you update us on the contributions you have received so far?
Best,
Julio
El 26/01/2012 10:21, Julio R. Banga escribió:
Dear BioPreDyn PIs,
(cc Bertrand Moreau, CSM)
as you know, one of the key expected outcomes of BioPreDyn is:
"To deliver an integrated suite of tools and newly
developed/improved algorithms to support the entire
model building cycle."
This integrated suite will be done in the framework of WP3,
and, more in particular, software integration is the focus
of task 3.5 and deliverable D3.4.
Although this task is leaded by CWI, in close cooperation
with CSM, we are all (except FS) involved since we are all
expected to contribute with novel and existing algorithms.
During the writing of the proposal, and also during other
contacts afterwards, we basically agreed that CSM will receive
methods from the other partners and will re-implement them
in their integrated software framework.
*The purpose of this email is to open a discussion on the
detailed road map to achieve this.
*
Following the proposal and the DIP of WP3 (attached again),
these are the*key topics and actions needed (marked with >>)*:
- CWI will develop an SB-cycle protocol with inputs from
all participants. >>*Joke(CWI): could you please write a draft
of this and distribute it so everyone can give feedback asap?*
- Each partner should detail, in agreement with the
project proposal, their contributions (methods/tools),
including the expected date when this will be sent to
CSM and some technical details (purpose, language, I/O
formats, etc.) *>> Eric/Bertrand(CSM): could you give
us a template of the minimum info you need for this?
Also, could you give us an example of an existing
software package using your framework? (if there is one)
--
-------------------------------------------------------------
Prof. Julio R. Banga
BioProcess Engineering Group
Instituto de Investigaciones Marinas
(C.S.I.C.)
Spanish Council for Scientific Research
C/Eduardo Cabello 6
36208 Vigo (SPAIN)
E-mail: julio(a)iim.csic.es
Web http://www.iim.csic.es/~julio/
http://www.iim.csic.es/~gingproc/
Blog http://jrbanga.posterous.com/
Positions http://www.iim.csic.es/~julio/positions.html
ph: +34 986 214 473 (direct)
fax: +34 986 292 762
-------------------------------------------------------------
> ALL: please send the info on your planned
contributions
following CSM's template
*
Finally, a suggestion: in the proposal (see also the DIP of WP3),
we also mentioned that INSIL will integrate some of these
algorithms into their own software framework. This enhances
the dissemination of the methods, a key objective of the
project. Maybe a subset of the methods can also be
integrated in COPASI. Feedback from Pedro on this?
What do the rest of you think about it?
Best regards,
Julio
--
-------------------------------------------------------------
Prof. Julio R. Banga
BioProcess Engineering Group
Instituto de Investigaciones Marinas
(C.S.I.C.)
Spanish Council for Scientific Research
C/Eduardo Cabello 6
36208 Vigo (SPAIN)
E-mail:julio@iim.csic.es
Webhttp://www.iim.csic.es/~julio/
http://www.iim.csic.es/~gingproc/
Bloghttp://jrbanga.posterous.com/
Positionshttp://www.iim.csic.es/~julio/positions.html
ph: +34 986 214 473 (direct)
fax: +34 986 292 762
-------------------------------------------------------------
_______________________________________________
Biopredyn_pi mailing list
Biopredyn_pi(a)lists.crg.es
http://davinci.crg.es/mailman/listinfo/biopredyn_pi
4:35 p.m.
New subject: [Biopredyn_pi] BioPreDyn: software integration (task 3.5) -- ACTIONS NEEDED --
Dear Julio,
Here is the list of the contributions we have received so far:
- CSIC:
- Parameter Estimation Tool
- EMBL-EBI:
- CellNOpt
- BridgeDb
- LibSBGN
- PathVisio
- WikiPathways
Best regards,
On Wed, Feb 8, 2012 at 10:18 AM, Julio R. Banga <julio(a)iim.csic.es> wrote:
Dear BioPreDyn PIs,
this is a friendly reminder regarding some of the actions needed listed
below. We really need to define a roadmap for the software integration,
so, if you have not done so, please send your feedback and requested
materials (below) asap.
Bertrand, could you update us on the contributions you have received so
far?
Best,
Julio
El 26/01/2012 10:21, Julio R. Banga escribió:
Dear BioPreDyn PIs,
(cc Bertrand Moreau, CSM)
as you know, one of the key expected outcomes of BioPreDyn is:
"To deliver an integrated suite of tools and newly
developed/improved algorithms to support the entire
model building cycle."
This integrated suite will be done in the framework of WP3,
and, more in particular, software integration is the focus
of task 3.5 and deliverable D3.4.
Although this task is leaded by CWI, in close cooperation
with CSM, we are all (except FS) involved since we are all
expected to contribute with novel and existing algorithms.
During the writing of the proposal, and also during other
contacts afterwards, we basically agreed that CSM will receive
methods from the other partners and will re-implement them
in their integrated software framework.
*The purpose of this email is to open a discussion on the
detailed road map to achieve this.
*
Following the proposal and the DIP of WP3 (attached again),
these are the* key topics and actions needed (marked with >>)*:
- CWI will develop an SB-cycle protocol with inputs from
all participants. >>*Joke(CWI): could you please write a draft
of this and distribute it so everyone can give feedback asap?*
- Each partner should detail, in agreement with the
project proposal, their contributions (methods/tools),
including the expected date when this will be sent to
CSM and some technical details (purpose, language, I/O
formats, etc.) *>> Eric/Bertrand(CSM): could you give
us a template of the minimum info you need for this?
Also, could you give us an example of an existing
software package using your framework? (if there is one)
--
Bertrand Moreau
R&D engineer
The CoSMo Company
+336 58 27 42 08
This message and any attachments are the property of The CoSMo Company; they are strictly
confidential and intended solely for the addressees. If you are not the intended recipient
of this message, please delete it and immediately notify the sender. Any use not in
accordance with the purpose of this message and any dissemination or disclosure, either
whole or partial, is prohibited except with formal approval.
Ce message et toutes les pieces jointes sont la propriete de The CoSMo Company ; ils sont
etablis a l'intention exclusive de ses destinataires et sont confidentiels. Si vous
recevez ce message par erreur, merci de le detruire et d'en avertir immediatement
l'expediteur. Toute utilisation non conforme a sa destination, toute diffusion ou
toute publication, totale ou partielle est interdite, sans autorisation expresse.
> ALL: please send the info on your planned
contributions
following CSM's template
*
Finally, a suggestion: in the proposal (see also the DIP of WP3),
we also mentioned that INSIL will integrate some of these
algorithms into their own software framework. This enhances
the dissemination of the methods, a key objective of the
project. Maybe a subset of the methods can also be
integrated in COPASI. Feedback from Pedro on this?
What do the rest of you think about it?
Best regards,
Julio
--
-------------------------------------------------------------
Prof. Julio R. Banga
BioProcess Engineering Group
Instituto de Investigaciones Marinas
(C.S.I.C.)
Spanish Council for Scientific Research
C/Eduardo Cabello 6
36208 Vigo (SPAIN)
E-mail: julio(a)iim.csic.es
Web http://www.iim.csic.es/~julio/
http://www.iim.csic.es/~gingproc/
Blog http://jrbanga.posterous.com/
Positions http://www.iim.csic.es/~julio/positions.html
ph: +34 986 214 473 (direct)
fax: +34 986 292 762
-------------------------------------------------------------
_______________________________________________
Biopredyn_pi mailing
listBiopredyn_pi@lists.crg.eshttp://davinci.crg.es/mailman/listinfo/biopredyn_pi
--
-------------------------------------------------------------
Prof. Julio R. Banga
BioProcess Engineering Group
Instituto de Investigaciones Marinas
(C.S.I.C.)
Spanish Council for Scientific Research
C/Eduardo Cabello 6
36208 Vigo (SPAIN)
E-mail: julio(a)iim.csic.es
Web http://www.iim.csic.es/~julio/
http://www.iim.csic.es/~gingproc/
Blog http://jrbanga.posterous.com/
Positions http://www.iim.csic.es/~julio/positions.html
ph: +34 986 214 473 (direct)
fax: +34 986 292 762
-------------------------------------------------------------
23 Mar
23 Mar
3:36 a.m.
New subject: [Biopredyn_pi] BioPreDyn: software integration (task 3.5) -- ACTIONS NEEDED --
On 02/08/2012 09:18 AM, Julio R. Banga wrote:
Maybe a subset of the methods can also be
integrated in COPASI. Feedback from Pedro on this?
What do the rest of you think about it?
Yes indeed, we can implement new optimisation methods in COPASI. We are
actually currently implementing a variant of differential evolution, and
can any others.
Pedro
23 Feb
23 Feb
10:34 p.m.
Dear BioPreDyn Partners:
For all of you who have not done so yet, please indicate your
availability and the topics you could teach during the workshop in Jun
(see original email below for dates and suggested topics).
Julio Banga and I will draft a program for the workshop that we will
circulate as soon as possible. This is slightly urgent since we'll
need to open the application process and refine the schedule and
teaching format in time.
Thanks! (Especially to those of you who have already sent me this information.)
Best,
Yogi
On Wed, Jan 25, 2012 at 10:54 AM, Yogi Jaeger <Yogi.Jaeger(a)crg.eu> wrote:
Dear BioPreDyn PIs,
Some more detailed information on the BioPreDyn workshop Jun 11-15. We would like to ask
you to come to Barcelona for 2-3 days during that week. We will try to have people be here
either the first or the second half of the week, so we could all have a meeting together
on Wed to discuss the results of the work in the focus groups to define benchmark
problems.
It would be great if you could send your availability on either
Mon-Wed, Jun 11-13 or
Wed-Fri, Jun 13-15
to Eva Navarrete (eva.navarrete(a)crg.eu).
The teaching format would be to have about 1-1.5 hours of theoretical lecture, followed
by 1-2 hours of practical sessions (laptops can be provided by the CRG). We can
accommodate a maximum of 16 participants. Lectures/practicals should be taught by PIs
and/or senior postdocs. Academic partners would be expected to contribute. For commercial
partners: it would be great if CoSMo could present their software framework in a bit more
detail (theoretical lecture only?). Klaus (InSilico): it would be great if you would like
to contribute to the session on high-performance, for example. But contributions by SMEs
would be voluntary.
Apart from letting us know about your availability, could you tell me what kind of topics
you would like to cover. Julio Banga and I will co-ordinate your inputs into a (hopefully)
coherent program for the workshop.
Thanks a lot for your help with this!
Best,
Yogi
--
Dr. Johannes Jaeger
EMBL/CRG Research Unit in Systems Biology
CRG - Centre de Regulació Genòmica
Dr. Aiguader 88
08003 Barcelona, Spain
Phone: +34 93 316 02 85
Fax: +34 93 396 99 83
Email: yogi.jaeger(a)crg.es or yoginho(a)gmail.com
URL: http://www.crg.es/johannes_jaeger
24 Feb
24 Feb
9:36 a.m.
New subject: [Biopredyn_pi] BioPreDyn workshop - Jun 11-15, 2012 (additional information)
Hi Yogi,
Sorry if didn't reply yet (I am currently flooded by teaching stuff). Yes I am able to
come to (at least a part of) this workshop. Preferably I would like to come in the period
13-15 June.
the topics you could teach during the workshop in Jun
(see original email below for dates and suggested topics).
I can give a lecture about:
-inferring networks and optimization techniques (but I guess you are planning the same
thing?)
-geometry extraction and analysis of in situ hybridisations in Nematostella
-cell-based modelling in 2D and 3D
-modelling spatial physiology
also about (but I am not sure if it is relevant for BioPredyn)
-macroscopical modelling of growth and form of sponges and corals
-3D morphometrics of complex-shaped branching objects
I don't dare to promise that I also 'have a lab session available for these topics
(we are still working on Drosophila based lab assignment, but probably you already have
something like this?)
all the best,
Jaap
Dr Jaap A. Kaandorp
Section Computational Science
Faculty of Science
University of Amsterdam
Science Park 904, room C3.147
1098 XH Amsterdam
The Netherlands
Phone: +31 20 5257539 /+31 20 5257462
Skype: jaap.kaandorp
email: J.A.Kaandorp(a)uva.nl
fax: +31 20 5257419
URL: http://www.science.uva.nl/~jaapk/
________________________________________
Van: biopredyn_pi-bounces(a)lists.crg.es [biopredyn_pi-bounces(a)lists.crg.es] namens Johannes
Jaeger [yogi.jaeger(a)crg.eu]
Verzonden: donderdag 23 februari 2012 22:34
Aan: biopredyn_pi(a)lists.crg.es
CC: Michela Bertero; Eva Navarrete Espuna; Olaf Kostbahn
Onderwerp: Re: [Biopredyn_pi] BioPreDyn workshop - Jun 11-15, 2012 (additional
information)
Dear BioPreDyn Partners:
For all of you who have not done so yet, please indicate your
availability and the topics you could teach during the workshop in Jun
(see original email below for dates and suggested topics).
Julio Banga and I will draft a program for the workshop that we will
circulate as soon as possible. This is slightly urgent since we'll
need to open the application process and refine the schedule and
teaching format in time.
Thanks! (Especially to those of you who have already sent me this information.)
Best,
Yogi
On Wed, Jan 25, 2012 at 10:54 AM, Yogi Jaeger <Yogi.Jaeger(a)crg.eu> wrote:
Dear BioPreDyn PIs,
Some more detailed information on the BioPreDyn workshop Jun 11-15. We would like to ask
you to come to Barcelona for 2-3 days during that week. We will try to have people be here
either the first or the second half of the week, so we could all have a meeting together
on Wed to discuss the results of the work in the focus groups to define benchmark
problems.
It would be great if you could send your availability on either
Mon-Wed, Jun 11-13 or
Wed-Fri, Jun 13-15
to Eva Navarrete (eva.navarrete(a)crg.eu).
The teaching format would be to have about 1-1.5 hours of theoretical lecture, followed
by 1-2 hours of practical sessions (laptops can be provided by the CRG). We can
accommodate a maximum of 16 participants. Lectures/practicals should be taught by PIs
and/or senior postdocs. Academic partners would be expected to contribute. For commercial
partners: it would be great if CoSMo could present their software framework in a bit more
detail (theoretical lecture only?). Klaus (InSilico): it would be great if you would like
to contribute to the session on high-performance, for example. But contributions by SMEs
would be voluntary.
Apart from letting us know about your availability, could you tell me what kind of topics
you would like to cover. Julio Banga and I will co-ordinate your inputs into a (hopefully)
coherent program for the workshop.
Thanks a lot for your help with this!
Best,
Yogi
--
Dr. Johannes Jaeger
EMBL/CRG Research Unit in Systems Biology
CRG - Centre de Regulació Genòmica
Dr. Aiguader 88
08003 Barcelona, Spain
Phone: +34 93 316 02 85
Fax: +34 93 396 99 83
Email: yogi.jaeger(a)crg.es or yoginho(a)gmail.com
URL: http://www.crg.es/johannes_jaeger
_______________________________________________
Biopredyn_pi mailing list
Biopredyn_pi(a)lists.crg.es
http://davinci.crg.es/mailman/listinfo/biopredyn_pi
27 Feb
27 Feb
11:34 a.m.
New subject: [Biopredyn_pi] BioPreDyn workshop - Jun 11-15, 2012 (additional information)
Dear Yogi,
I am not sure if I have done so, apologies if this is a repeat.
I am available, and I can teach either of the following topics:
- basic concepts of modelling and simulation with ODEs and stochastic
algorithms
- optimisation algorithms and applications of optimisation for
biochemical network modelling
- modelling and simulation using COPASI
- optimisation and parameter estimation with COPASI
best wishes
Pedro
--
Pedro Mendes
Professor of Computational Systems Biology
School of Computer Science
Manchester Centre for Integrative Systems Biology
University of Manchester
Manchester Interdisciplinary Biocentre
131 Princess Street
Manchester, M1 7DN, U.K.
On 02/23/2012 09:34 PM, Johannes Jaeger wrote:
Dear BioPreDyn Partners:
For all of you who have not done so yet, please indicate your
availability and the topics you could teach during the workshop in Jun
(see original email below for dates and suggested topics).
Julio Banga and I will draft a program for the workshop that we will
circulate as soon as possible. This is slightly urgent since we'll
need to open the application process and refine the schedule and
teaching format in time.
Thanks! (Especially to those of you who have already sent me this information.)
Best,
Yogi
On Wed, Jan 25, 2012 at 10:54 AM, Yogi Jaeger<Yogi.Jaeger(a)crg.eu> wrote:
Dear BioPreDyn PIs,
Some more detailed information on the BioPreDyn workshop Jun 11-15. We would like to ask
you to come to Barcelona for 2-3 days during that week. We will try to have people be here
either the first or the second half of the week, so we could all have a meeting together
on Wed to discuss the results of the work in the focus groups to define benchmark
problems.
It would be great if you could send your availability on either
Mon-Wed, Jun 11-13 or
Wed-Fri, Jun 13-15
to Eva Navarrete (eva.navarrete(a)crg.eu).
The teaching format would be to have about 1-1.5 hours of theoretical lecture, followed
by 1-2 hours of practical sessions (laptops can be provided by the CRG). We can
accommodate a maximum of 16 participants. Lectures/practicals should be taught by PIs
and/or senior postdocs. Academic partners would be expected to contribute. For commercial
partners: it would be great if CoSMo could present their software framework in a bit more
detail (theoretical lecture only?). Klaus (InSilico): it would be great if you would like
to contribute to the session on high-performance, for example. But contributions by SMEs
would be voluntary.
Apart from letting us know about your availability, could you tell me what kind of topics
you would like to cover. Julio Banga and I will co-ordinate your inputs into a (hopefully)
coherent program for the workshop.
Thanks a lot for your help with this!
Best,
Yogi
4563
days inactive
4621
days old
8 comments
6 participants
participants (6)
-
Bertrand Moreau -
Johannes Jaeger -
Julio R. Banga -
Kaandorp, Jaap -
Pedro Mendes -
Yogi Jaeger