Hello all,
Here are the minutes of our brief analysis group TC of July 26th.
The next call will be on
August 9th, in two weeks. As
today, we'll continue that with a QC call (if Peter is available).
- Tuuli gave a brief update on QC and will send around a sample
information sheet with information of which samples to use in
analysis
- The Leiden group is interested in analyzing expression of
transposons - it seems to be variable between individuals and
could be used as a quantitative trait in eQTL analysis. Despite
the repetitiveness there is a fair number of reads mapping to
these loci, but care should be takes to about allele-specific
mapping bias. Peter will be in touch with Daniela whose n-TAR
analysis might be related to this.
- Tuuli, Manolis and Natalja have talked about suggesting a
collaboration to Paul Flicek's group regarding sharing and
visualizing our data in the Ensembl browser.
- The wiki is read-only right now and our data is being
transferred to a new system. Gabrielle will let us know when it's
done
We continued with a smaller group to discuss the QC companion
paper:
- Peter has gone through earlier presentations about QC, and Tuuli
will send him the latest results
- Peter has been in touch with Olof and Jonas, who have promised
contribute both analysis and writing to the QC paper
- Peter will put together an outline of the paper and the
analyses, send around an email to ask who wants to be involved in
the QC paper, and then we can assign analyses to specific people
- There might be some competition on the QC front from other
RNAseq consortia. We could discuss with editors in advance, around
September when we have a better idea of the structure of the
paper. Nature Biotechnology might be a good journal to start from.
Tuuli will discuss this with Manolis.
best regards,
Tuuli
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen@unige.ch
On 7/26/12 10:06 AM, Tuuli Lappalainen wrote: