Hello and happy new year!
The first batch of Geuvadis mRNAseq data from UNIGE is now available
at the ftp site.
If you're interested in taking a look at these 103 samples, feel
free to do so. The fastq files and the sample info can be found from
/upload/geuvadis/wp4_rnaseq/main_project/sequence_data/fastq/mrna
Of these data, I've defined sandbox datasets for testing purposes as
we discussed - see the Analysis page of the wiki. There's a small
set of 5 samples that I chose to be those that we're doing in
replicate in all the labs. For a little big bigger scale testing, I
fixed a set of 24 samples (the 5+19 others). Of these 24, I have
uploaded the bam files from mapping with bwa in:
/upload/geuvadis/wp4_rnaseq/main_project/working/mapping/bam/normal_hg19/bwa
.
As agreed before, we'll have an analysis group TC next week,
January 12, at 2pm. I'll send the agenda (and a reminder) next
week.
best regards,
Tuuli
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen@unige.ch