Hello,
Here are the minutes. The next call will be in one week, October
4th.
- One thing that I forgot to emphasize on the call so I'll write
it here: we need to start wrapping up the analysis in order to
stay on schedule.
Deadline for analysis is in two
weeks - there can be updates later on, but you should send
material to Tuuli by then.
- There will be a whole group call including the PIs in about 2
weeks to discuss paper outlines, publication policies and
companions. Everyone is welcome to join
- Discussion on RNAseq presentations in Santiago. We'll have a
30-45 minutes slot in the morning; Tuuli and/or Manolis will
present on the progress of the WP and the outline of the main
paper. Peter will give a ~15 minute presentation on QC maybe in
the afternoon.
- Tuuli has sent around a draft outline of the main paper and main
figures/tables. It can be found in the wiki; feel free to edit.
http://sanabre.net/geuvadis/index.php/Papers
- Manny presented slides on splice site variant effects on
junction quantifications. Looking good; some additional analysis
to do using Micha's splice scores and Tuuli's further
normalization by gene quantification. Tuuli will also look into
ASE evidence of splice variants causing NMD.
best regards,
Tuuli
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen@unige.ch
On /26/912 21:56 PM, Tuuli Lappalainen wrote: