Hi,
as discussed in our last TC, we performed a test on the gene discovery rate with sample permuations: 30 permutations on CEU in the attached plot, it can also be found on the wiki site.
I think the result looks quite attractive; we may comment on that during the call, but I think this is a suitable way to represent the phenomenon--maybe with a couple of more permutations, I suggest ~150.
Best, micha
--
Dr. Michael Sammeth, GL Functional Bioinformatics
Phone: +34-934-020-580, http://www.cnag.eu
Centre Nacional d'Anàlisi Genòmica (CNAG), PCB
Baldiri Reixac 4-6, Room 02A8, 08028 Barcelona
On Thu, May 24, 2012 at 1:27 PM, Manuel Rivas <rivas@broadinstitute.org> wrote:
> Hello,
>
> Attached are some slides with an update of LoF analysis.
>
> Best Regards,
> Manny
>
> On Thu, May 24, 2012 at 9:28 AM, Tuuli Lappalainen
> <Tuuli.Lappalainen@unige.ch> wrote:
>> Hello all,
>>
>> We'll have a Geuvadis analysis group TC today (May 24th) at 2pm CET.
>>
>> On the agenda:
>> - ASHG abstract(s)
>> - wiki and shared writing tools
>> - plans for public sharing of data and documentation
>> - data formats and identifiers
>> - variant annotations
>> - Manny will give an update of LoF analysis
>> - Tuuli will present some slides of ASE analysis (if there's time)
>>
>> Call details are:
>>
>> from outside spain; 0034917911859
>> from spain; 900800678
>> Access code; 3160100
>>
>>
>> best regards,
>> Tuuli
>>
>> --
>> Tuuli Lappalainen, PhD
>> Department of Genetic Medicine and Development
>> University of Geneva Medical School
>> CMU / Rue Michel-Servet 1
>> 1211 Geneva 4
>> Switzerland
>> Tel. +41-(0)22-3795550
>> tuuli.lappalainen@unige.ch
>>
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>
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