geuvadis_rnaseq May 2012

geuvadis_rnaseq@lists.crg.es

11 participants
7 discussions

by Mathias Brännvall

Dear colleagues, Here at last is the QC-survey for geuvadis. I kindly ask each partner to answer it and send back to me by *11 August* at the latest. As the survey covers both laboratory details and bioinformatics I suggest that each principal investigator at each site delegates the task to the appropriate person(s). For question 11 and 22: You don't have to describe every data analysis pipeline you have, that would be to much to ask. Please choose one or two you use the most and/or one that you have particular expertise in. Please don't hesitate to ask me if there is something that is unclear. Thank you and best summer greetings to all of you. Mathias -- _____________________________________________ Mathias Brännvall, PhD Project coordinator Dept. of Medical Sciences, sect. Molecular Medicine, Uppsala University Akademiska sjukhuset, ing. 70, 3 tr phone: +46-(0)18-6114934 mobile: +46-(0)70-1679446 e-mail: Mathias.Brannvall(a)medsci.uu.se

12 years, 5 months

[Geuvadis_rnaseq] Geuvadis RNAseq abstract for ASHG

by Tuuli Lappalainen

Dear all, Enclosed please find a draft for the abstract that I'm planning to submit on behalf of the Geuvadis RNAseq project for the ASHG meeting in San Francisco. Comments are welcome; please send them by June 4th. The abstract has the maximum allowed number of authors (30) - at least one analyst per group and the PIs. I know there are many others who would deserve to be on that list, and apologies for not being able to include you here. In addition to this main abstract, there will be at least one sub-project abstract that will be sent around later. best regards, Tuuli -- Tuuli Lappalainen, PhD Department of Genetic Medicine and Development University of Geneva Medical School CMU / Rue Michel-Servet 1 1211 Geneva 4 Switzerland Tel. +41-(0)22-3795550 tuuli.lappalainen(a)unige.ch

12 years, 12 months

[Geuvadis_rnaseq] GEUVADIS RNA Analysis Meeting 2: BARCELONA

by Gabrielle Anne Bertier

Dear all, Please find here the registration form<https://docs.google.com/spreadsheet/viewform?pli=1&formkey=dDFxZ2diT0hUVFhu…> for the 2nd GEUVADIS RNA analysis meeting; which will take place at the CRG in Barcelona; on:. Monday July 9th; from 12:00 to 17:00 Tuesday July 10th; from 09:00 to 16:00. A detail agenda will follow soon. Please forward this to any relevant person in your lab. Registration deadline: 8th June 2012 The hotel has to be paid from your own GEUVADIS budget. We have pre-booked 30 hotel rooms for the 9th of July near the CRG; in: Hotel H10 Marina<http://www.hotelh10marinabarcelona.com/en/index.html> Hotel H4<http://www.besthotelscities.com/hotel4barcelona/index.php> If you want to stay for more nights, or in a different hotel please tick the according box in the registration form, and we'll provide you with hotel suggestions. Registration form full link: https://docs.google.com/spreadsheet/viewform?pli=1&formkey=dDFxZ2diT0hUVFhu… Don't hesitate to contact me in case you have any question, Kind regards, Gabrielle Gabrielle Bertier Scientific Project Manager International and Scientific Affairs CRG, Center for Genomic Regulation Carrer Dr. Aiguader, 88 08003 Barcelona, España Tel: +34933160374 Mobile: +34639960656 email: gabrielle.bertier(a)crg.es<mailto:gabrielle.bertier@crg.es> web: www.geuvadis.eu; www.fliact.eu

12 years, 12 months

[Geuvadis_rnaseq] poster prize for Geuvadis RNAseq project

by Tuuli Lappalainen

Dear all, I already told the Geuvadis RNAseq analysis group that our poster at the Biology of Genomes meeting was very popular - in addition to that, on the last day of the meeting it was announced to be one of the poster prize winners! Thanks again for all of you for your contribution thus far. I'm now even more motivated than before to continue the work to meet the high expectations for our project. best regards, Tuuli -- Tuuli Lappalainen, PhD Department of Genetic Medicine and Development University of Geneva Medical School CMU / Rue Michel-Servet 1 1211 Geneva 4 Switzerland Tel. +41-(0)22-3795550 tuuli.lappalainen(a)unige.ch

13 years

[Geuvadis_rnaseq] Geuvadis RNAseq analysis group meeting July 9-10

by Tuuli Lappalainen

Dear all, We will have the next Geuvadis analysis group meeting in Barcelona in July 9-10. More info will follow around the end of May. best regards, Tuuli -- Tuuli Lappalainen, PhD Department of Genetic Medicine and Development University of Geneva Medical School CMU / Rue Michel-Servet 1 1211 Geneva 4 Switzerland Tel. +41-(0)22-3795550 tuuli.lappalainen(a)unige.ch

13 years

[Geuvadis_rnaseq] GEUVADIS RNAseq General Update

by Gabrielle Anne Bertier

Dear all, At the request of Tuuli, please fill in the doodle<http://doodle.com/3i5f4wt28ez596sx> to schedule a TC with the whole RNAseq group for an update on the data analysis. Tentative agenda: - status of the data - updates from the analysis group meeting - analysis plans - Biology of Genomes poster draft - future meetings Kind regards, Gabrielle doodle full link: http://doodle.com/3i5f4wt28ez596sx Gabrielle Bertier Scientific Project Manager International Collaboration Office CRG, Center for Genomic Regulation Carrer Dr. Aiguader, 88 08003 Barcelona, España Tel: +34933160374 Mobile: +34639960656 email: gabrielle.bertier(a)crg.es<mailto:gabrielle.bertier@crg.es> web: www.geuvadis.eu

13 years

[Geuvadis_rnaseq] Geuvadis RNAseq poster for Biology of Genomes

by Tuuli Lappalainen

Dear all, Enclosed please find a draft of the Geuvadis RNAseq poster that I'll be presenting next week at the Biology of Genomes meeting in Cold Spring Harbor. Small changes are still possible until Thursday, so comments are welcome. I think we managed to put together some pretty cool results in a very short time - my special thanks go to Micha, Marc F, Jean and Manny for contributing results and figures for the poster. best regards, Tuuli -- Tuuli Lappalainen, PhD Department of Genetic Medicine and Development University of Geneva Medical School CMU / Rue Michel-Servet 1 1211 Geneva 4 Switzerland Tel. +41-(0)22-3795550 tuuli.lappalainen(a)unige.ch

13 years

2025

2024

2023

2022

2021

2020

2019

2018

2017

2016

2015

2014

2013

2012

2011

geuvadis_rnaseq May 2012