Dear colleagues,
Here at last is the QC-survey for geuvadis. I kindly ask each partner to
answer it and send back to me by *11 August* at the latest.
As the survey covers both laboratory details and bioinformatics I
suggest that each principal investigator at each site delegates the task
to the appropriate person(s).
For question 11 and 22: You don't have to describe every data analysis
pipeline you have, that would be to much to ask. Please choose one or
two you use the most and/or one that you have particular expertise in.
Please don't hesitate to ask me if there is something that is unclear.
Thank you and best summer greetings to all of you.
Mathias
--
_____________________________________________
Mathias Brännvall, PhD
Project coordinator
Dept. of Medical Sciences, sect. Molecular Medicine,
Uppsala University
Akademiska sjukhuset, ing. 70, 3 tr
phone: +46-(0)18-6114934
mobile: +46-(0)70-1679446
e-mail: Mathias.Brannvall(a)medsci.uu.se
Dear all,
Enclosed please find a draft for the abstract that I'm planning to
submit on behalf of the Geuvadis RNAseq project for the ASHG meeting in
San Francisco. Comments are welcome; please send them by June 4th.
The abstract has the maximum allowed number of authors (30) - at least
one analyst per group and the PIs. I know there are many others who
would deserve to be on that list, and apologies for not being able to
include you here.
In addition to this main abstract, there will be at least one
sub-project abstract that will be sent around later.
best regards,
Tuuli
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
Dear all,
Please find here the registration form<https://docs.google.com/spreadsheet/viewform?pli=1&formkey=dDFxZ2diT0hUVFhu…> for the 2nd GEUVADIS RNA analysis meeting; which will take place at the CRG in Barcelona; on:.
Monday July 9th; from 12:00 to 17:00
Tuesday July 10th; from 09:00 to 16:00.
A detail agenda will follow soon.
Please forward this to any relevant person in your lab.
Registration deadline: 8th June 2012
The hotel has to be paid from your own GEUVADIS budget.
We have pre-booked 30 hotel rooms for the 9th of July near the CRG; in:
Hotel H10 Marina<http://www.hotelh10marinabarcelona.com/en/index.html>
Hotel H4<http://www.besthotelscities.com/hotel4barcelona/index.php>
If you want to stay for more nights, or in a different hotel please tick the according box in the registration form, and we'll provide you with hotel suggestions.
Registration form full link: https://docs.google.com/spreadsheet/viewform?pli=1&formkey=dDFxZ2diT0hUVFhu…
Don't hesitate to contact me in case you have any question,
Kind regards,
Gabrielle
Gabrielle Bertier
Scientific Project Manager
International and Scientific Affairs
CRG, Center for Genomic Regulation
Carrer Dr. Aiguader, 88
08003 Barcelona, España
Tel: +34933160374
Mobile: +34639960656
email: gabrielle.bertier(a)crg.es<mailto:gabrielle.bertier@crg.es>
web: www.geuvadis.eu; www.fliact.eu
Dear all,
I already told the Geuvadis RNAseq analysis group that our poster at the
Biology of Genomes meeting was very popular - in addition to that, on
the last day of the meeting it was announced to be one of the poster
prize winners!
Thanks again for all of you for your contribution thus far. I'm now even
more motivated than before to continue the work to meet the high
expectations for our project.
best regards,
Tuuli
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
Dear all,
We will have the next Geuvadis analysis group meeting in Barcelona in
July 9-10. More info will follow around the end of May.
best regards,
Tuuli
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
Dear all,
At the request of Tuuli, please fill in the doodle<http://doodle.com/3i5f4wt28ez596sx> to schedule a TC with the whole RNAseq group for an update on the data analysis.
Tentative agenda:
- status of the data
- updates from the analysis group meeting
- analysis plans
- Biology of Genomes poster draft
- future meetings
Kind regards,
Gabrielle
doodle full link: http://doodle.com/3i5f4wt28ez596sx
Gabrielle Bertier
Scientific Project Manager
International Collaboration Office
CRG, Center for Genomic Regulation
Carrer Dr. Aiguader, 88
08003 Barcelona, España
Tel: +34933160374
Mobile: +34639960656
email: gabrielle.bertier(a)crg.es<mailto:gabrielle.bertier@crg.es>
web: www.geuvadis.eu
Dear all,
Enclosed please find a draft of the Geuvadis RNAseq poster that I'll be
presenting next week at the Biology of Genomes meeting in Cold Spring
Harbor. Small changes are still possible until Thursday, so comments are
welcome.
I think we managed to put together some pretty cool results in a very
short time - my special thanks go to Micha, Marc F, Jean and Manny for
contributing results and figures for the poster.
best regards,
Tuuli
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch