geuvadis_rnaseq June 2012

geuvadis_rnaseq@lists.crg.es

3 participants
5 discussions

by Mathias Brännvall

Dear colleagues, Here at last is the QC-survey for geuvadis. I kindly ask each partner to answer it and send back to me by *11 August* at the latest. As the survey covers both laboratory details and bioinformatics I suggest that each principal investigator at each site delegates the task to the appropriate person(s). For question 11 and 22: You don't have to describe every data analysis pipeline you have, that would be to much to ask. Please choose one or two you use the most and/or one that you have particular expertise in. Please don't hesitate to ask me if there is something that is unclear. Thank you and best summer greetings to all of you. Mathias -- _____________________________________________ Mathias Brännvall, PhD Project coordinator Dept. of Medical Sciences, sect. Molecular Medicine, Uppsala University Akademiska sjukhuset, ing. 70, 3 tr phone: +46-(0)18-6114934 mobile: +46-(0)70-1679446 e-mail: Mathias.Brannvall(a)medsci.uu.se

11 years, 9 months

[Geuvadis_rnaseq] DEADLINE TODAY - GEUVADIS RNA Analysis Meeting 2: BARCELONA

by Gabrielle Anne Bertier

Gentle reminder Please register today ! Gabrielle Registration form full link: https://docs.google.com/spreadsheet/viewform?pli=1&formkey=dDFxZ2diT0hUVFhu… From: Gabrielle Anne Bertier Sent: 05 June, 2012 10:04 AM To: 'geuvadis_rna_analysis(a)lists.crg.es'; 'geuvadis_rnaseq(a)lists.crg.es' Cc: 'geuvadis_wpl(a)lists.crg.es'; Xavier Estivill; Michela Bertero; 'Tuuli Lappalainen'; Magali Bartomeus Cistare Subject: REMINDER: GEUVADIS RNA Analysis Meeting 2: BARCELONA Dear all, please remember to register for the meeting before this Friday ! Gabrielle Registration form full link: https://docs.google.com/spreadsheet/viewform?pli=1&formkey=dDFxZ2diT0hUVFhu… From: Gabrielle Anne Bertier Sent: 30 May, 2012 1:20 PM To: geuvadis_rna_analysis(a)lists.crg.es<mailto:geuvadis_rna_analysis@lists.crg.es>; geuvadis_rnaseq(a)lists.crg.es<mailto:geuvadis_rnaseq@lists.crg.es> Cc: geuvadis_wpl(a)lists.crg.es<mailto:geuvadis_wpl@lists.crg.es>; Xavier Estivill; Michela Bertero; 'Tuuli Lappalainen'; Magali Bartomeus Cistare Subject: GEUVADIS RNA Analysis Meeting 2: BARCELONA Dear all, Please find here the registration form<https://docs.google.com/spreadsheet/viewform?pli=1&formkey=dDFxZ2diT0hUVFhu…> for the 2nd GEUVADIS RNA analysis meeting; which will take place at the CRG in Barcelona; on:. Monday July 9th; from 12:00 to 17:00 Tuesday July 10th; from 09:00 to 16:00. A detail agenda will follow soon. Please forward this to any relevant person in your lab. Registration deadline: 8th June 2012 The hotel has to be paid from your own GEUVADIS budget. We have pre-booked 30 hotel rooms for the 9th of July near the CRG; in: Hotel H10 Marina<http://www.hotelh10marinabarcelona.com/en/index.html> Hotel H4<http://www.besthotelscities.com/hotel4barcelona/index.php> If you want to stay for more nights, or in a different hotel please tick the according box in the registration form, and we'll provide you with hotel suggestions. Registration form full link: https://docs.google.com/spreadsheet/viewform?pli=1&formkey=dDFxZ2diT0hUVFhu… Don't hesitate to contact me in case you have any question, Kind regards, Gabrielle Gabrielle Bertier Scientific Project Manager International and Scientific Affairs CRG, Center for Genomic Regulation Carrer Dr. Aiguader, 88 08003 Barcelona, España Tel: +34933160374 Mobile: +34639960656 email: gabrielle.bertier(a)crg.es<mailto:gabrielle.bertier@crg.es> web: www.geuvadis.eu; www.fliact.eu

12 years, 3 months

[Geuvadis_rnaseq] REMINDER: GEUVADIS RNA Analysis Meeting 2: BARCELONA

by Gabrielle Anne Bertier

Dear all, please remember to register for the meeting before this Friday ! Gabrielle Registration form full link: https://docs.google.com/spreadsheet/viewform?pli=1&formkey=dDFxZ2diT0hUVFhu… From: Gabrielle Anne Bertier Sent: 30 May, 2012 1:20 PM To: geuvadis_rna_analysis(a)lists.crg.es; geuvadis_rnaseq(a)lists.crg.es Cc: geuvadis_wpl(a)lists.crg.es; Xavier Estivill; Michela Bertero; 'Tuuli Lappalainen'; Magali Bartomeus Cistare Subject: GEUVADIS RNA Analysis Meeting 2: BARCELONA Dear all, Please find here the registration form<https://docs.google.com/spreadsheet/viewform?pli=1&formkey=dDFxZ2diT0hUVFhu…> for the 2nd GEUVADIS RNA analysis meeting; which will take place at the CRG in Barcelona; on:. Monday July 9th; from 12:00 to 17:00 Tuesday July 10th; from 09:00 to 16:00. A detail agenda will follow soon. Please forward this to any relevant person in your lab. Registration deadline: 8th June 2012 The hotel has to be paid from your own GEUVADIS budget. We have pre-booked 30 hotel rooms for the 9th of July near the CRG; in: Hotel H10 Marina<http://www.hotelh10marinabarcelona.com/en/index.html> Hotel H4<http://www.besthotelscities.com/hotel4barcelona/index.php> If you want to stay for more nights, or in a different hotel please tick the according box in the registration form, and we'll provide you with hotel suggestions. Registration form full link: https://docs.google.com/spreadsheet/viewform?pli=1&formkey=dDFxZ2diT0hUVFhu… Don't hesitate to contact me in case you have any question, Kind regards, Gabrielle Gabrielle Bertier Scientific Project Manager International and Scientific Affairs CRG, Center for Genomic Regulation Carrer Dr. Aiguader, 88 08003 Barcelona, España Tel: +34933160374 Mobile: +34639960656 email: gabrielle.bertier(a)crg.es<mailto:gabrielle.bertier@crg.es> web: www.geuvadis.eu; www.fliact.eu

12 years, 3 months

[Geuvadis_rnaseq] Re : Geuvadis LoF abstract for ASHG

by Tuuli Emilia LAPPALAINEN

Hello all, After some thought we've decided to add a couple of names to the author list of the LoF abstract. Our initial author list included people who are contributing specifically to LoF analysis, Natalja and Thasso for processing of the entire dataset, and the PIs and the Geuvadis Consortium representing the data. But it's fair to include one analysis person from all the labs on behalf of the data production, so we added Marc, Matthias, Olof, and Monkol from Daniel's lab. Thus, the latest version of the author list is the following: Manuel A Rivas, Tuuli Lappalainen, Michael Sammeth, Daniel MacArthur, Natalja Kurbatova, Thomas Wieland, Monkol Lek, Thasso Griebel, Matthias Barann, Marc Sultan, Olof Karlberg, Peter AC ‘t Hoen, Tim Strom, Stefan Schreiber, Hans Lehrach, Stylianos Antonarakis, Gert-Jan van Ommen, Ralf Sudbrak, Robert Häsler, Alvis Brazma, Ann-Christine Syvanen, Philip Rosenstiel, Thomas Meitinger, Roderic Guigo, Ivo Gut, Xavier Estivill, Mark McCarthy, Emmanouil T Dermitzakis, The Geuvadis Consortium best regards, Tuuli Le 01-06-12, Manuel Rivas <rivas(a)broadinstitute.org> a écrit : > Hello, > > Attached is an abstract that I am planning to submit on behalf of the project on loss of variants and their effect on the transcriptome. Please do send any comments you may have by Monday, June 4th. > > > > > Best Regards, > Manuel Rivas > > >

12 years, 3 months

[Geuvadis_rnaseq] Geuvadis LoF abstract for ASHG

by Manuel Rivas

Hello, Attached is an abstract that I am planning to submit on behalf of the project on loss of variants and their effect on the transcriptome. Please do send any comments you may have by Monday, June 4th. Best Regards, Manuel Rivas

12 years, 3 months

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geuvadis_rnaseq June 2012