7 Oct
2011
7 Oct
'11
11:24 a.m.
Dear all,
Mathias suggested that we could adjust the sample counts in different
labs to multiplies to 12, 24 or 48. Would that make the sample
processing easier in your lab?
Below are the sample allocations:
- the original allocation is what we have agreed on
- we also agreed that in addition to that, 5 samples would be
sequenced in every lab. However, there are 18 cell lines out of the
total 500 that we haven't been able to obtain/grow, so the second
column contains the counts adjusted by these numbers.
- the third column has the suggested adjustment to even numbers.
It would be a bit less sequencing for most of the labs, and a
bit more for Geneva.
Please let me know as soon as possible if you think we should adjust the
allocations. For most of the labs the numbers would change only little.
best regards,
Tuuli
original +duplicates -dropoffs adjusted
UNIGE 130 130 157
CRG 100 102 96
MPIMG 70 73 72
HMGU 50 53 48
UU 50 53 48
LUMC 50 53 48
ICMB 50 53 48
total 500 517 517
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
7 Oct
7 Oct
11:30 a.m.
We (Kiel) would be willing to take 72 as well.
Best, Philip
Von: geuvadis_rnaseq-bounces(a)lists.crg.es [mailto:geuvadis_rnaseq-bounces@lists.crg.es] Im
Auftrag von Tuuli Lappalainen
Gesendet: Freitag, 7. Oktober 2011 11:25
An: geuvadis_rnaseq(a)lists.crg.es
Betreff: [Geuvadis_rnaseq] Geuvadis sample allocations
Dear all,
Mathias suggested that we could adjust the sample counts in different labs to multiplies
to 12, 24 or 48. Would that make the sample processing easier in your lab?
Below are the sample allocations:
- the original allocation is what we have agreed on
- we also agreed that in addition to that, 5 samples would be sequenced in every lab.
However, there are 18 cell lines out of the total 500 that we haven't been
able to obtain/grow, so the second column contains the counts adjusted by these numbers.
- the third column has the suggested adjustment to even numbers. It would be a bit
less sequencing for most of the labs, and a bit more for Geneva.
Please let me know as soon as possible if you think we should adjust the allocations. For
most of the labs the numbers would change only little.
best regards,
Tuuli
original
+duplicates -dropoffs
adjusted
UNIGE
130
130
157
CRG
100
102
96
MPIMG
70
73
72
HMGU
50
53
48
UU
50
53
48
LUMC
50
53
48
ICMB
50
53
48
total
500
517
517
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen@unige.ch<mailto:tuuli.lappalainen@unige.ch>
12:58 p.m.
Tuuli. Fine 96.
Regards.
Xavier
El 07/10/2011, a les 11:27, "Tuuli Lappalainen"
<Tuuli.Lappalainen@unige.ch<mailto:Tuuli.Lappalainen@unige.ch>> va escriure:
Dear all,
Mathias suggested that we could adjust the sample counts in different labs to multiplies
to 12, 24 or 48. Would that make the sample processing easier in your lab?
Below are the sample allocations:
- the original allocation is what we have agreed on
- we also agreed that in addition to that, 5 samples would be sequenced in every lab.
However, there are 18 cell lines out of the total 500 that we haven't been
able to obtain/grow, so the second column contains the counts adjusted by these numbers.
- the third column has the suggested adjustment to even numbers. It would be a bit
less sequencing for most of the labs, and a bit more for Geneva.
Please let me know as soon as possible if you think we should adjust the allocations. For
most of the labs the numbers would change only little.
best regards,
Tuuli
original +duplicates -dropoffs adjusted
UNIGE 130 130 157
CRG 100 102 96
MPIMG 70 73 72
HMGU 50 53 48
UU 50 53 48
LUMC 50 53 48
ICMB 50 53 48
total 500 517 517
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
<mailto:tuuli.lappalainen@unige.ch>tuuli.lappalainen@unige.ch<mailto:tuuli.lappalainen@unige.ch>
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Geuvadis_rnaseq@lists.crg.es<mailto:Geuvadis_rnaseq@lists.crg.es>
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1 p.m.
I agree. It makes the handling of the samples easier.
Tim
Tuuli Lappalainen wrote:
Dear all,
Mathias suggested that we could adjust the sample counts in different
labs to multiplies to 12, 24 or 48. Would that make the sample
processing easier in your lab?
Below are the sample allocations:
- the original allocation is what we have agreed on
- we also agreed that in addition to that, 5 samples would be
sequenced in every lab. However, there are 18 cell lines out of the
total 500 that we haven't been able to obtain/grow, so the second
column contains the counts adjusted by these numbers.
- the third column has the suggested adjustment to even numbers. It
would be a bit less sequencing for most of the labs, and a bit
more for Geneva.
Please let me know as soon as possible if you think we should adjust the
allocations. For most of the labs the numbers would change only little.
best regards,
Tuuli
original +duplicates -dropoffs adjusted
UNIGE 130 130 157
CRG 100 102 96
MPIMG 70 73 72
HMGU 50 53 48
UU 50 53 48
LUMC 50 53 48
ICMB 50 53 48
total 500 517 517
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
------------------------------------------------------------------------
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--
Tim M. Strom, MD Tel: +49 89 3187 3296
Institute of Human Genetics Fax: +49 89 3187 3297
http://ihg.helmholtz-muenchen.de
Helmholtz Zentrum München
Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH)
Ingolstädter Landstr. 1
85764 Neuherberg
www.helmholtz-muenchen.de
Aufsichtsratsvorsitzende: MinDir´in Bärbel Brumme-Bothe
Geschäftsführer: Prof. Dr. Günther Wess und Dr. Nikolaus Blum
Registergericht: Amtsgericht München HRB 6466
USt-IdNr: DE 129521671
10 Oct
10 Oct
4:50 p.m.
Dear all,
So let's adjust the sample allocations a little bit to get even numbers
- but in general let's stay as close as possible to the original
contributions that have been agreed on before. Thus, the numbers of
samples to be sequenced by each lab are:
UNIGE 157
CRG 96
MPIMG 72
HMGU 48
UU 48
LUMC 48
ICMB 48
Please order the reagents according these numbers.
best regards,
Tuuli
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
On 10/7/11 7:00 AM, Tim M Strom wrote:
I agree. It makes the handling of the samples easier.
Tim
Tuuli Lappalainen wrote:
Dear all,
Mathias suggested that we could adjust the sample counts in different
labs to multiplies to 12, 24 or 48. Would that make the sample
processing easier in your lab?
Below are the sample allocations:
- the original allocation is what we have agreed on
- we also agreed that in addition to that, 5 samples would be
sequenced in every lab. However, there are 18 cell lines out of
the total 500 that we haven't been able to obtain/grow, so
the second column contains the counts adjusted by these numbers.
- the third column has the suggested adjustment to even numbers. It
would be a bit less sequencing for most of the labs, and a
bit more for Geneva.
Please let me know as soon as possible if you think we should adjust
the allocations. For most of the labs the numbers would change only
little.
best regards,
Tuuli
original +duplicates -dropoffs adjusted
UNIGE 130 130 157
CRG 100 102 96
MPIMG 70 73 72
HMGU 50 53 48
UU 50 53 48
LUMC 50 53 48
ICMB 50 53 48
total 500 517 517
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
------------------------------------------------------------------------
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4 comments
4 participants
participants (4)
-
Rosenstiel, Philip -
Tim M Strom -
Tuuli Lappalainen -
Xavier Estivill