Hello,
I've organized the quantification and QTL files that I suggest that we
release when the paper is eventually published (no news from Nature
yet). The attached exel sheet contains brief descriptions and FTP
locations of the data files as well as sample information files (note
that it has multiple sheets). I'll prepare more detailed documentation
before the files go public.
In summary, I suggest that we release the following files. Any
objections / additions?
- quantifications of exons, transcripts, genes, repeats, miRNAs, RNA
edited sites. Of all these: raw counts and library depth corrected
quantifications of all QC-passed samples, as well as PEER-normalized
files of nonredundant samples.
- QTLs of all the above: all significant associations and best
association per gene for both CEU and YRI.
Natalja, you can start organizing the files, but do NOT release them to
the public yet.
best,
Tuuli
--
Tuuli Lappalainen, PhD
Department of Genetics, Stanford University School of Medicine , and
Department of Genetic Medicine and Development, University of Geneva
Email: tuuli.e.lappalainen(a)gmail.com / tlappala(a)stanford.edu
Tel: +1 415 351 9713
Bustamante lab
Department of Genetics
300 Pasteur Dr. Lane L301
Stanford, CA 94305-5120
USA
Attachments:
- files_release.xlsx
(application/vnd.openxmlformats-officedocument.spreadsheetml.sheet — 113.6 KB)