[Geuvadis_rna_analysis] Variant annotations

Dear all, The functional annotations for all Geuvadis variants are now available. Many thanks to everyone in the loss-of-function group for all the work that it took to put this together. The file for all 1000g variants: /upload/geuvadis/wp4_rnaseq/main_project/external_data/genetic_variation/variant_info/ALL.phase1_release_v3.20101123.snps_indels_sv.sites.gdid.gdannot.v2.vcf.gz . The files of variants in Geuvadis data (genotype files and sites file) have also been updated to include the new annotations: /upload/geuvadis/wp4_rnaseq/main_project/external_data/genetic_variation/genotype/phase1_phase2/ The wiki is now read-only, so the documentation for this can be found in the following googledoc. https://docs.google.com/document/d/1wR0oyg01M-wfoWxjN7KX6c6UqqksbW_3to2_N7S… best regards, Tuuli Tuuli Lappalainen, PhD Department of Genetic Medicine and Development University of Geneva Medical School CMU / Rue Michel-Servet 1 1211 Geneva 4 Switzerland Tel. +41-(0)22-3795550 tuuli.lappalainen(a)unige.ch I'll also upload the file to http://jungle.unige.ch/~lappalainen/ <http://jungle.unige.ch/%7Elappalainen/> The documentation is under the link below. Can you please take a look - especially Monkol and Manny - and let me know by Thursday if everything seems OK, and add/edit if necessary? I'll share this with the rest of the analysis group after that. https://docs.google.com/document/d/1wR0oyg01M-wfoWxjN7KX6c6UqqksbW_3to2_N7S… cheers, Tuuli -- Tuuli Lappalainen, PhD Department of Genetic Medicine and Development University of Geneva Medical School CMU / Rue Michel-Servet 1 1211 Geneva 4 Switzerland Tel. +41-(0)22-3795550 tuuli.lappalainen(a)unige.ch