[Geuvadis_rna_analysis] GEM - BWA comparison results

Hi all, Here are some slides from the GEM-bwa comparison. 5 samples were mapped with the two mappers, and I analyzed mapping statistics, exon quantifications and allelic ratios. As expected, GEM maps a lot more reads than bwa, and seems to perform very well also otherwise. We can discuss this (and other things) on Thursday's analysis group call (2pm) - I'll send the call details later. best regards, Tuuli -- Tuuli Lappalainen, PhD Department of Genetic Medicine and Development University of Geneva Medical School CMU / Rue Michel-Servet 1 1211 Geneva 4 Switzerland Tel. +41-(0)22-3795550 tuuli.lappalainen(a)unige.ch