[Geuvadis_rna_analysis] QC and data updates

Hello, A couple of data and analysis updates: - QC: I've reran the plots of sample correlations and clustering using the correlation matrices provided by Peter. The total dataset shows clustering by lab rather than populations (probably because systematical differences between these populations are not that big), but the replicate samples look very good with lab effects being less than biological variation. See http://sanabre.net/geuvadis/index.php/MRNA#Sample_correlation_and_clusterin… - Splice junctions for Manny: I've normalized the junctions by total gene count, to able able to extract splice changes from variation in overall expression level. The files of these with subsequent transformation to standard normal are in /upload/geuvadis/wp4_rnaseq/main_project/analysis_data/quantification/splice_junction-intron , file names with GeneN. have a nice weekend, Tuuli -- Tuuli Lappalainen, PhD Department of Genetic Medicine and Development University of Geneva Medical School CMU / Rue Michel-Servet 1 1211 Geneva 4 Switzerland Tel. +41-(0)22-3795550 tuuli.lappalainen(a)unige.ch