Hello all,
I'd like to update to Gencode v12 gene annotation (Ensembl 67) in the
Geuvadis RNAseq project after all.
After a lot of discussions, I'm now taking back my last week's decision
to stick to v7. That would have made some things easier but others more
difficult, and I wouldn't want us to lose any power because of an
outdated annotation that might make a bit of a difference especially in
the LoF variant annotations. It's not too late to switch yet - we'll
need to rerun the transcript quantifications though. We'll let you know
when it's done. No one expressed a strong opinion about this before, but
if you disagree, please say it now.
best regards,
Tuuli
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch