[Geuvadis_rna_analysis] normalized miRNA quantifications

Hello all, I've uploaded normalized miRNA quantifications to the ftp site: /upload/geuvadis/wp4_rnaseq/main_project/analysis_data/mirna/quantification_tables . See wiki (http://sanabre.net/geuvadis/index.php/Basic_methodology) for details. There are files for: - 363 European QC-passed samples, corrected with 10 PEER factors (including population and seqlab). - 89 Yoruba QC-passed samples, corrected with 5 PEER factors (including seqlab). These files should be considered slightly preliminary - it is possible that we'll end up using these in the end, but before freezing this I want to do some covariate analysis (once I get the fastq QC stats). We should do eQTL analysis separately for EUR and YRI, but as we discussed on the call, miRNA-mRNA correlations could maybe be done on the whole dataset after correcting for population. I'll produce these files in ~1 week - for this I'll also need to normalize the mRNA data in a similar manner, and that takes more time to run. In the meanwhile you can probably use the population-specific data. cheers, Tuuli -- Tuuli Lappalainen, PhD Department of Genetic Medicine and Development University of Geneva Medical School CMU / Rue Michel-Servet 1 1211 Geneva 4 Switzerland Tel. +41-(0)22-3795550 tuuli.lappalainen(a)unige.ch