Hello,
At last I've finished running the allele-specific expression analysis
for all the Geuvadis samples. The master file is available in :
/upload/geuvadis/wp4_rnaseq/main_project/analysis_data/ase
See the wiki
(
http://sanabre.net/geuvadis/index.php/Allele_specific_expression) for
details of the analysis. Variant annotation info is included in the
files; more details again in the wiki
(
http://sanabre.net/geuvadis/index.php/Variant_annotation). I will be
working on the analysis of these data in the next couple of weeks - I'll
produce the basic stats and descriptions of ASE, look at the population
genetics of ASE, and see how far we can get with mapping of rare
regulatory variants.
I've also recently developed a pipeline for analyzing allele-specific
splicing (ASS :-) ) in a genome-wide manner, but more about that later...
have a nice weekend,
Tuuli
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch