-----Original Message----- From: geuvadis_rna_analysis-bounces(a)lists.crg.es [mailto:geuvadis_rna_analysis-bounces@lists.crg.es] On Behalf Of Tuuli Lappalainen Sent: Sunday, January 27, 2013 2:34 AM To: geuvadis_rna_analysis(a)lists.crg.es Subject: [Geuvadis_rna_analysis] data files for future release Hello, I've organized the quantification and QTL files that I suggest that we release when the paper is eventually published (no news from Nature yet). The attached exel sheet contains brief descriptions and FTP locations of the data files as well as sample information files (note that it has multiple sheets). I'll prepare more detailed documentation before the files go public. In summary, I suggest that we release the following files. Any objections / additions? - quantifications of exons, transcripts, genes, repeats, miRNAs, RNA edited sites. Of all these: raw counts and library depth corrected quantifications of all QC-passed samples, as well as PEER-normalized files of nonredundant samples. - QTLs of all the above: all significant associations and best association per gene for both CEU and YRI. Natalja, you can start organizing the files, but do NOT release them to the public yet. best, Tuuli -- Tuuli Lappalainen, PhD Department of Genetics, Stanford University School of Medicine , and Department of Genetic Medicine and Development, University of Geneva Email: tuuli.e.lappalainen(a)gmail.com / tlappala(a)stanford.edu Tel: +1 415 351 9713 Bustamante lab Department of Genetics 300 Pasteur Dr. Lane L301 Stanford, CA 94305-5120 USA