Hi all,
Here are some slides from the GEM-bwa comparison. 5 samples were mapped
with the two mappers, and I analyzed mapping statistics, exon
quantifications and allelic ratios. As expected, GEM maps a lot more
reads than bwa, and seems to perform very well also otherwise.
We can discuss this (and other things) on Thursday's analysis group call
(2pm) - I'll send the call details later.
best regards,
Tuuli
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
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