Dear all, I've updated and reorganized the Geuvadis RNAseq ftp site and wiki. The ftp site now has the following data available (among some additional things): - fastq freezes of both mRNA and miRNA - bwa bam files of all the mRNA data - exon read counts based on bwa mapping - genotypes of the phase1 samples (that don't need imputation) - functional annotation of the genetic variants - sample information sheets and lists of problematic mRNA samples - ASE results with variant annotations (this lacks documentation for now though) Please see the wiki (Data storage section) for further information of the contents of the wiki - those of you uploading data to the ftp, please keep this section of the wiki up to date. The wiki has documentation of what has been done thus far, methods, practical informations and e.g. examples of how to use Aspera, and other information (such as the analysis plan). I'll be in touch with some of you to add data and/or documentation. best regards, Tuuli -- Tuuli Lappalainen, PhD Department of Genetic Medicine and Development University of Geneva Medical School CMU / Rue Michel-Servet 1 1211 Geneva 4 Switzerland Tel. +41-(0)22-3795550 tuuli.lappalainen(a)unige.ch