Hi, as mentioned in the call last thursday we uploaded the (first round of) mapping counts in non-exonic elements; these are currently limited to known junctions and all-intronic regions that are transcribed but not retained in any mature transcript, based on Gencode v12. The location on the FTP server is below, Emilio (from CRG) realized counting and the upload. Cheers, micha ---------- Forwarded message ---------- From: Emilio <emiliopalumbo(a)gmail.com> Date: Mon, Jul 2, 2012 at 5:59 PM Subject: Geuvadis SJ and Intron mapping counts upload To: Micha Sammeth <micha(a)sammeth.net> Hi Micha, I uploaded the data to the ftp. The folder is: /upload/geuvadis/wp4_rnaseq/main_project/analysis_data/quantification/splice_junction-intron Cheers, Emilio