[Geuvadis_rna_analysis] Geuvadis mRNA data from unige

Hello and happy new year! The first batch of Geuvadis mRNAseq data from UNIGE is now available at the ftp site. If you're interested in taking a look at these 103 samples, feel free to do so. The fastq files and the sample info can be found from /upload/geuvadis/wp4_rnaseq/main_project/sequence_data/fastq/mrna Of these data, I've defined sandbox datasets for testing purposes as we discussed - see the Analysis page of the wiki. There's a small set of 5 samples that I chose to be those that we're doing in replicate in all the labs. For a little big bigger scale testing, I fixed a set of 24 samples (the 5+19 others). Of these 24, I have uploaded the bam files from mapping with bwa in: /upload/geuvadis/wp4_rnaseq/main_project/working/mapping/bam/normal_hg19/bwa . As agreed before, we'll have an *analysis group TC next week, January 12, at 2pm*. I'll send the agenda (and a reminder) next week. best regards, Tuuli -- Tuuli Lappalainen, PhD Department of Genetic Medicine and Development University of Geneva Medical School CMU / Rue Michel-Servet 1 1211 Geneva 4 Switzerland Tel. +41-(0)22-3795550 tuuli.lappalainen(a)unige.ch