Hello,
Here are the minutes. The next call will be in one week, October 4th.
- One thing that I forgot to emphasize on the call so I'll write it
here: we need to start wrapping up the analysis in order to stay on
schedule. *Deadline for analysis is in **two weeks* - there can be
updates later on, but you should send material to Tuuli by then.
- There will be a whole group call including the PIs in about 2 weeks to
discuss paper outlines, publication policies and companions. Everyone is
welcome to join
- Discussion on RNAseq presentations in Santiago. We'll have a 30-45
minutes slot in the morning; Tuuli and/or Manolis will present on the
progress of the WP and the outline of the main paper. Peter will give a
~15 minute presentation on QC maybe in the afternoon.
- Tuuli has sent around a draft outline of the main paper and main
figures/tables. It can be found in the wiki; feel free to edit.
http://sanabre.net/geuvadis/index.php/Papers
- Manny presented slides on splice site variant effects on junction
quantifications. Looking good; some additional analysis to do using
Micha's splice scores and Tuuli's further normalization by gene
quantification. Tuuli will also look into ASE evidence of splice
variants causing NMD.
best regards,
Tuuli
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
On /26/912 21:56 PM, Tuuli Lappalainen wrote:
Hello,
We'll have our regular Geuvadis RNAseq analysis group call on
September 27th at 2pm CET.
Agenda:
- agenda for the whole group call within 2 weeks
- presentations in Santiago de Compostela
- draft of the main paper outline by Tuuli
- we need to come up with a good common statistics (or two) to
describe population variation of different transcriptome features
- Manny will presentation on loff-of-function splice variant effects
Call details:
Germany +49 692 573 804 41 <tel:%2B49%20692%20573%20804%2041>
Netherlands +31 108 920 271 <tel:%2B31%20108%20920%20271>
Spain +34 931 816 661 <tel:%2B34%20931%20816%20661>
Sweden +46 840 309 949 <tel:%2B46%20840%20309%20949>
Switzerland +41 58 262 07 22 <tel:%2B41%2058%20262%2007%2022>
United Kingdom +44 203 370 57 19 <tel:%2B44%20203%20370%2057%2019>
United States +1 646 381 08 89 <tel:%2B1%20646%20381%2008%2089>
/Access code: 611683 /
best regards,
Tuuli
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
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