24 May
2012
24 May
'12
1:34 p.m.
Hi,
as discussed in our last TC, we performed a test on the gene discovery rate
with sample permuations: 30 permutations on CEU in the attached plot, it
can also be found on the wiki site.
I think the result looks quite attractive; we may comment on that during
the call, but I think this is a suitable way to represent the
phenomenon--maybe with a couple of more permutations, I suggest ~150.
Best, micha
--
Dr. Michael Sammeth, GL Functional Bioinformatics
Phone: +34-934-020-580, http://www.cnag.eu
Centre Nacional d'Anàlisi Genòmica (CNAG), PCB
Baldiri Reixac 4-6, Room 02A8, 08028 Barcelona
On Thu, May 24, 2012 at 1:27 PM, Manuel Rivas <rivas(a)broadinstitute.org>
wrote:
Hello,
Attached are some slides with an update of LoF analysis.
Best Regards,
Manny
On Thu, May 24, 2012 at 9:28 AM, Tuuli Lappalainen
<Tuuli.Lappalainen(a)unige.ch> wrote:
Hello all,
We'll have a Geuvadis analysis group TC today (May 24th) at 2pm CET.
On the agenda:
- ASHG abstract(s)
- wiki and shared writing tools
- plans for public sharing of data and documentation
- data formats and identifiers
- variant annotations
- Manny will give an update of LoF analysis
- Tuuli will present some slides of ASE analysis (if there's time)
Call details are:
from outside spain; 0034917911859
from spain; 900800678
Access code; 3160100
best regards,
Tuuli
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
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