Hello,
Here are the minutes. The next call will be either next week, August
30th, or in two weeks on September 6th - I'll let you know next week.
- People should update methods and analyses in the new wiki, and send
also an email to the analysis group list if there's significant new content
- The date and location of the analysis group meeting is undecided -
please will in the form:
https://docs.google.com/spreadsheet/viewform?formkey=dGhhRkVCSllrNEdTYVlSZ3…
.
- Marc has uploaded miRNA QC and quantification results
- Tuuli is finishing ASE analysis and putting together the final methods
and pipeline for eQTL analysis
- Pedro emailed Tuuli that the exon inclusion statistics and
differential expression analysis is pretty much done
- Matthias and Philip from Kiel presented results of splicing and soft
splicing analysis. Matthias will try to join the next loss-of-function
call to discuss the best ways to quantify splicing and test the
statistical association to genotypes; they will look into population
variation of soft splicing also without the aspect of genetic variants.
best regards,
Tuuli
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
On 8/22/12 3:16 PM, Tuuli Lappalainen wrote:
Hello,
We'll have a Geuvadis RNAseq analysis group TC on Thursday August 23rd
at 2pm.
On the agenda:
- the next analysis group meeting
- presentation by Matthias about soft splicing (probably, if the phone
system of their new building allows him to call in)
- other analysis updates
- AOB
Call details are:
from outside spain; 0034917911859 <tel:0034917911859>
from spain; 900800678
Access code; 3160100
best regards,
Tuuli
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
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