Hello,
Here are the minutes of today's TC. The next call will be in one or two
weeks, I'll send an email next week. If anyone has analysis
approaches/results that they'd like to present, please let me know.
On today's call:
- We agreed to cancel the third analysis group meeting that we had been
putatively planning - Tuuli's unscheduled knee surgery prevents
commitment to hosting a meeting anywhere this fall. We'll have a ~2h
meeting in Santiago in the morning of Tuesday 30.10. for those who are
there.
- At the Santiago meeting the RNAseq work package will have a short WP
summary presentation and maybe a 30-45 min presentation about the
analysis and results (i.e. contents of the paper). Others can also
present RNAseq related results; otherwise Tuuli and Manolis will do the
presentations
- We should schedule a TC for the whole RNAseq group (including the PIs)
for late September / early October.
- The wiki site will soon move to the CRG server which will change its
address but not content.
- Discussion on Leiden's miRNA-mRNA correlations that seem to have some
bias, as well as some miRNA mapping related questions. miRNA-mRNA
correlations will be tested with data that has been normalized for
technical variance (Tuuli will provide shortly).
- Tuuli presented slides about eQTL methodology - corrections and
normalizations of both genotype and expression data, and the main
principles and ideas about QTL mapping. Preliminary analysis shows the
expected result of transcript quantifications yielding much less eQTLs
than exon quantifications.
best regards,
Tuuli
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
On 8/30/12 2:06 PM, Tuuli Lappalainen wrote:
Waiting for the chairperson - I sent an email to Gabrielle, has anyone
from Barcelona seen her?
Tuuli
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
-------- Original Message --------
Subject: Re: [Geuvadis_rna_analysis] analysis group TC Aug 30th
Date: Thu, 30 Aug 2012 13:38:02 +0200
From: Tuuli Lappalainen <Tuuli.Lappalainen(a)unige.ch>
To: geuvadis_rna_analysis(a)lists.crg.es
<geuvadis_rna_analysis(a)lists.crg.es>
Here are my slides.
Tuuli
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
On 8/29/12 6:29 PM, Tuuli Lappalainen wrote:
Hello all,
We'll have a Geuvadis analysis group call on Thursday the 30th at 2pm
CET.
On the agenda:
- I'll present slides of eQTL mapping in Geuvadis, mostly from
methods point of view but with some early results.
- The third analysis group meeting - due to my upcoming but still
unscheduled knee surgery I unfortunately can't commit to hosting a
meeting in October even in Geneva let alone elsewhere, so I suggest
that we call this off for now. We can discuss more on the call.
- Other analysis updates
- AOB
Call details are:
from outside spain; 0034917911859 <tel:0034917911859>
from spain; 900800678
Access code; 3160100
best regards,
Tuuli
--
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
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