Hello,
Here are the minutes of the Geuvadis RNAseq analysis group call of June
7th - I had written them but forgotten to send, apologies for that.
best regards,
Tuuli
-Deadline of the Analysis group meeting in Barcelona (June 9-10) was
last Friday. Tuuli will put together a preliminary program.
-We'll update to GENCODE v12 annotation instead of v7 that we planned to
use before.
-Discussion of additional annotations -- miRNA annotation to use will be
from miRBase v18. Marc F. will check if we'll use Gencode snoRNA
annotation or something else.
-Exon quantifications from Tuuli, and Flux transcript quantifications
from Micha/Thasso are available on the ftp site
-Imputations are done, and Tuuli will finish the genotype files within days
-Loss-of-function subgroup (Manny, Tuuli, Daniel...) is updating variant
annotations, which will take a couple of weeks but will give us better
quality annotation info than what is available from 1000 Genomes.
-Tuuli presented slides about allele specific expression analysis
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
On 6/7/12 1:55 PM, Tuuli Lappalainen wrote:
Hello,
Here are my ASE slides.
best,
Tuuli
Tuuli Lappalainen, PhD
Department of Genetic Medicine and Development
University of Geneva Medical School
CMU / Rue Michel-Servet 1
1211 Geneva 4
Switzerland
Tel. +41-(0)22-3795550
tuuli.lappalainen(a)unige.ch
On 6/6/12 9:25 PM, Tuuli Lappalainen wrote:
> Hello all,
>
> We'll have a Geuvadis analysis group call on Thursday June 7th at 2PM
> CET.
>
> On the agenda:
> - Barcelona meeting arrangements
> - data updates: quantifications, genotypes, annotations
> - updates from subgroup analyses
> - Tuuli will present slides of allele-specific expression analysis
>
> Call details are:
> from outside spain; 0034917911859
> from spain; 900800678
> Access code; 3160100
>
> best regards,
> Tuuli
>
>